Literature
Handbooks, periodicals, reviews, special articles, guidelines
General handbooks and reviews
- Bauer, K.D., Duque, R.E. & Shankey, T.V. (eds.): Clinical flow cytometry. Williams & Wilkins, Baltimore, 1993 (ISBN 0-683-00480-8).
- Clinical Flow Wiki.
- Darzynkiewicz, Z., Crissman, H.A. & Robinson, J.P. (eds.): Cytometry. Third edition. Part A and B. Methods in Cell Biology, Volume 63 and 64, Academic Press, San Diego, USA, 2001. (ISBN 0-12-203053-2 (Part A); 0-12-203054-0 (Part B)).
- Darzynkiewicz, Z., Holden, E., Orfao, A., Telford, W. & Wlodkowic, D. (eds.): Recent Advances in Cytometry, Part A, 5th Edition, Volume 102, Instrumentation, Methods. Elsevier, 2011.
- Darzynkiewicz Z, Robinson JP, Roederer M (eds): Essential Cytometry Methods - Reliable Lab Solutions. Elsevier, Amsterdam, 2009 (ISBN: 978-0-12-375045-7).
- Darzynkiewicz, Z., Robinson, J.P. & Crissman, H.A. (eds.): Cytometry. Second edition. Part A and B. Methods in Cell Biology, Volume 41 and 42, Academic Press, San Diego, USA, 1994. (ISBN 0-12-203051-6 (Part A); 0-12-203052-4 (Part B)).
- Diamond RA, DeMaggio S (Eds.): In Living Color: Protocols in Flow Cytometry and Cell Sorting, Berlin, Springer, 2000.
- Givan AL: Flow Cytometry: First Principles. 2nd Edition. New York, Wiley-Liss, 2001.
- Haugland, R.P.: Handbook of Fluorescent Probes and Research Products. 10th edition. Molecular Probes, Eugene, OR, USA, 2005.
- Landay AL, Ault KA, Bauer KD, Rabinovitch PS (ed): Clinical flow cytometry. Annals of the New York Academy of Sciences, Vol 677, New York, USA, 1993.
- Larsen, J.K.: Flowcytometeret. Kapitel 15.1 i: Celledyrkning - En praktisk håndbog i dyrkning af mammale celler; Kielberg, V., Brünner, N. & Briand, P. (red.), Foreningen af Danske Lægestuderendes Forlag, København, 1994; 2. uændrede udgave. Gad, København, 2001; side 231-242.
- Leslie, G.: A basic guide to flow cytometry.
- Leslie, G.: A basic guide to cell sorting.
- Macey, M.G. (ed.): Flow cytometry - Clinical applications. Blackwell Scientific Publications, London, 1994 (ISBN 0-632-03673-7).
- McCoy, J.P. & Keren, D.F. (eds.): New applications of flow cytometry. Clinics in Laboratory Medicine 21 (4): 697-932, 2001.
- Melamed, M.R., Lindmo, T. & Mendelsohn, M.L. (eds.): Flow cytometry and sorting. Second edition. Wiley, New York, 1990 (ISBN 0-471-56235-1).
- Ormerod MG: Flow Cytometry. 2nd edition. Oxford, Bios, 1999.
- Ormerod, M. (ed.): Flow cytometry - A practical approach. Third edition. Oxford University Press, Oxford, UK, 2000 (ISBN 0-19-963824 1).
- Ormerod, M.: Flow Cytometry - A Basic Introduction - Wiki Version.
- Radbruch, A. (ed.): Flow cytometry and sorting. Second edition. Springer, Berlin, 2000 (ISBN 3-540-65630-8).
- Robinson, J.P. et al. (eds.): Current Protocols in Cytometry. Wiley, New York (ISBN 0-471-16131-4). Quarterly updates [15 % discount for ISAC members].
- Sack U, Tárnok A, Rothe G (eds): Cellular Diagnostics - Basic Principles, Methods and
Clinical Applications of Flow Cytometry. Karger, Basel, 2009 (www.karger.com/cellular_diagnostics).
- Shapiro, H.M.: Practical flow cytometry. 4th edition. Wiley-Liss, New York, 2003 (ISBN 0-471-41125-6) [15 % discount for ISAC members]. Free on-line access at Beckman Coulter.
- Shapiro HM, Perlmutter NG: Personal cytometers: slow flow or no flow? Cytometry A 69(7) :620-30, 2006.
- Sklar, L.A. (ed.): Flow cytometry for biotechnology. Oxford University Press, Oxford, 2005 (ISBN 13 978-0-19-515234-0).
- Stewart, C.C. & Nicholson, J.K.A. (eds.): Immunophenotyping. Wiley-Liss, New York, 2000 (ISBN 0-471-23957-7).
- Valet, G.: Concepts and History of Flow Cytometry and Cytomics at
Max-Planck-Institut für Biochemie, Martinsried (1960-2006).
- Valet G, Endl E, Müller S: 20 years of the German Society for Cytometry: past and future concepts. Cytometry (Part A) 79A: 891-893, 2011.
- Watson, J.V.: Introduction to flow cytometry. Cambridge University Press, Cambridge, 1991 (ISBN 0-521-38061-8).
- Weaver J (Ed.): Flow Cytometry. Methods, Volume 21, 2000.
- Wikipedia: Flowcytometry.
- Wulff S (Ed.): Guide to flow cytometry (published by DakoCytomation).
- Zola H (Ed.): Flow Cytometry. Journal of Immunological Methods, Volume 243, Numbers 1 and 2, 2000.
Periodicals
- Cytometry, Part A, published for the International Society for Advancement of Cytometry (ISAC).
Special issues, e.g.:
- ISAC 25th Anniversary (Cytometry 58A: 1-97, 2004).
- In memory of Mack J. Fulwyler (Cytometry 67A: 53-179, 2005).
- Cytometry, Part B, published for the International Clinical Cytometry Society (ICCS) [formerly: Cytometry/Communications in Clinical Cytometry (CCC), shared by ISAC and ICCS].
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Cell Proliferation, published for the Cell Proliferation Society.
- Cellular Oncology, published for the International Society for Cellular Oncology (ISCO).
Bioimaging
- Koo V, Hamilton PW, Williamson: Non-invasive in vivo imaging in small animal research. Cellular Oncology 28: 127-139, 2006.
- Pierzchalski A, Mittag A, Tarnok A: Observing the invisible: molecular and cellular imaging by multimodal virtual anatomy. Cytometry 71A: 538-539, 2007.
- Tuchin VV, Tárnok A, Zharov VP: In vivo flow cytometry: A horizon of opportunities. Cytometry (Part A) 79: 737-45, 2011.
- Wessels JT et al: In vivo imaging in experimental preclinical tumor research – A review. Cytometry 71A: 542-549, 2007.
Biosafety & cell sorting
- CDC Office of Health and Safety: Biosafety; links to Biosafety in Microbiological and Biomedical Laboratories (BMBL); extensive list of reference documents and standards.
- ISAC website, see Resources and Standards.
- OSHA (U.S. Dept. of Labor, Occupational Safety & Health Admin.); extensive list of guidance documents and information, e.g. on bloodborne pathogens.
- Perfetto, S.P., Ambrozak, D.R., Koup, R.A., Roederer, M.: Measuring Containment of Viable Infectious Cell Sorting in High-Velocity Cell Sorters. Cytometry 52A: 122-130, 2003.
- Schmid, I., Dean, P.N.: Introduction to the biosafety guidelines for sorting of unfixed cells. Cytometry 28:97-98, 1997.
- Schmid, I., Merlin, S., Perfetto, S.P.: Biosafety concerns for shared flow cytometry core facilities. Cytometry 56A: 112-119, 2003.
- Schmid, I., Nicholson, J.K.A., Giorgi, J.V., Janossy, G., Kunkl, A., Lopez, P.A., Perfetto, S., Seamer, L.C., Dean, P.N.: Biosafety guidelines for sorting of unfixed cells. Cytometry 28:99-117, 1997.
Cell proliferation & cell death - apoptosis
- Bedner, E. et al.: Activation of caspases measured in situ by binding of fluorochrome-labeled inhibitors of caspases (FLICA): correlation with DNA fragmentation. Exp. Cell Res. 259: 308-313, 2000.
- Click-iT EdU cell proliferation assay kit for flow cytometry, Molecular Probes, 2007 (cat.no. C35002).
- Darzynkiewicz Z, Pozarowski P: All that glitters is not gold: all that FLICA binds is not caspase. a caution in data interpretation - and new opportunities. Cytometry 71A: 536-537, 2007.
- Dolbeare, F.: Bromodeoxyuridine: a diagnostic tool in biology and medicine. Part I-III. Histochem. J. 27: 339-369, 1995; 27: 923-964, 1995; 28: 531-575, 1996.
- Grabarek, J. & Darzynkiewicz, Z.: Flow cytometry of apoptosis. Current Protocols in Cytometry 7.19.1-7.19.34, 2002.
- Huang X, Halicka HD, Traganos F, Tanaka T, Kurose A, Darzynkiewicz Z: Cytometric assessment of DNA damage in relation to cell cycle phase and apoptosis. Cell Prolif 38: 223-243, 2005.
- Juan G, Darzynkiewicz Z: Detection of mitotic cells. Curr Protoc Cytom. 2004 May;Chapter 7:Unit 7.24.
- Koester SK, Schlossman SF, Zhang C, Decker SJ, Bolton WE: APO2.7 Defines a Shared Apoptotic–Necrotic Pathway
in a Breast Tumor Hypoxia Model. Cytometry 33:324–332 (1998).
- Larsen JK, Munch-Petersen B, Christiansen J, Jørgensen K: Flow cytometric discrimination of mitotic cells:
Resolution of M, as well as G1, S, and G2 phase nuclei with mithramycin, propidium iodide, and ethidium bromide
after fixation with formaldehyde. Cytometry 7: 54-63, 1986.
- Larsen, J.K.: Flowcytometri med intracellulære markører. Kapitel 15.2 i: Celledyrkning - En praktisk håndbog i dyrkning af mammale celler; Kielberg, V., Brünner, N. & Briand, P. (red.), Foreningen af Danske Lægestuderendes Forlag, København, 1994; 2. uændrede udgave. Gad, København, 2001; side 231-242.
- Larsen, J.K.: Cell proliferation: analysis by flow cytometry. Nouv Rev Fr Hematol. 34: 317-35, 1992.
- O’Brien MC, Healy Jr SF, Raney SR, Hurst JM, Avner B, Hanly A, Mies C, Freeman JW, Snow C, Koester SK, Bolton WE: Discrimination of Late Apoptotic/Necrotic Cells (Type III) by Flow Cytometry in Solid Tumors. Cytometry 28:81–89 (1997).
- Smith, P. et al.: Characteristics of a novel deep red/infrared fluorescent cell-permeant DNA probe, DRAQ5, in intact human cells analyzed by flow cytometry, confocal and multiphoton microscopy. Cytometry 40: 280-291, 2000.
- Smolewski, P. et al.: Kinetics of HL-60 cell entry to apoptosis during treatment with TNF-alpha or camptothecin assayed by the stathmo-apoptosis method. Cytometry 47: 143-149, 2002.
- Wlodkowic D, Skommer J, Darzynkiewicz Z: Cytometry in cell necrobiology revisited. Recent advances and new vistas. Cytometry A. 2010 Jul; 77(7): 591-606.
- Zhao H, Dobrucki J, Rybak P, Traganos F, Dorota Halicka H, Darzynkiewicz Z: Induction of DNA damage signaling by oxidative stress in relation to DNA replication as detected using "click chemistry". Cytometry (Part A) 79A: 897-902, 2011.
- Zhao H, Li J, Traganos F, Halicka HD, Zarebski M, Dobrucki J, Darzynkiewicz Z: Cell fixation in zinc salt solution is compatible with DNA damage response detection by phospho-specific antibodies. Cytometry (Part A) 79: 470-6, 2011.
Cytogenetics & gene expression - microarrays, bioinformatics
- Baxevanis, A.D & Ouellette, B.F.F.: Bioinformatics. A practical guide to the analysis of genes and proteins. Wiley, New York, 2001 (ISBN 0-471-38391-0).
- Baxevanis, A.D. et al. (eds.): Current Protocols in Bioinformatics. Wiley, New York (ISBN 0-471-25093-7). Quarterly updates.
- Carter, N.P., Fiegler, H. & Piper, J.: Comparative analysis of comparative genomic hybridization microarray technologies: Report of a workshop sponsored by the Wellcome Trust. Cytometry 49: 43-48, 2002.
- Celis, J.E. et al.: Gene expression profiling: monitoring transcription and translation products using DNA microarrays and proteomics. FEBS Letters 480: 2-16, 2000.
- Knudsen, S.: A biologist’s guide to analysis of DNA microarray data. Wiley, New York, 2002. (ISBN0-471-22490-1).
- Martinez-Ferrandis JI, Soriano MA, Martinez-romero A, Herrera G, Cervantes A, O'Connor J-E, Knecht E: Efficient selection of silenced primary cells by flow cytometry. Cytometry 71A: 599-604, 2007.
- Tema om bioinformatik. BioZoom nr. 3, 2002.
Cytomics
DNA aneuploidy
- Consensus reviews of the clinical utility of DNA flow cytometry in various cancer diseases (DNA cytometry consensus conference), see: Cytometry, Volume 14, Issue 5, 1993.
- Guidelines (1): ESACP’s DNA consensus in flow cytometry.
- Guidelines (2): Consensus report of the ESACP task force on standardization of diagnostic DNA image cytometry (A. Böcking, F. Giroud, A. Reith: Analytical Cellular Pathology, 8 : 67-74, 1995).
- Guidelines (3): Svensk Förening för Flödescytometri’s Guidelines for DNA FCM analysis of fresh and/or frozen tumor tissue, and the interpretation of DNA Histograms.
- Vindeløv, L.L. & Christensen, I.J.: A review of techniques and results obtained in one laboratory by an integrated system of methods designed for routine flow cytometric DNA analysis. Cytometry 11: 753-770, 1990.
Fluorescence conjugation
Immunophenotyping & leukemia & MRD
- Bethesda International Consensus Conference on Flow Cytometric Immunophenotyping of Hematolymphoid Neoplasia July 2006. Cytometry 72B, Suppl 1, 2007.
- Björklund, E. et al.: Flow cytometric follow-up of minimal residual disease in bone marrow gives prognostic information in children with acute lymphoblastic leukemia. Leukemia 17: 138-148, 2003.
- Björnsson S, Wahlström S, Norström E, Bernevi I, O'Neill U, Johansson E, Runström H, Simonsson P: Total nucleated cell differential for blood and bone marrow using a single tube in a five-color flow cytometer. Cytometry (Part B) 74: 91-103, 2008.
- Borowitz MJ, Craig FE, Digiuseppe JA, Illingworth AJ, Rosse W, Sutherland DR, Wittwer CT, Richards SJ; Clinical Cytometry Society: Guidelines for the diagnosis and monitoring of paroxysmal nocturnal hemoglobinuria and related disorders by flow cytometry. Cytometry B Clin Cytom. 2010 Jul;78(4):211-30.
- Brüggemann M, Schrauder A, Raff T, Pfeifer H, Dworzak M, Ottmann OG, Asnafi V, Baruchel A, Bassan R, Benoit Y, Biondi A, Cavé H, Dombret H, Fielding AK, Foà R, Gökbuget N, Goldstone AH, Goulden N, Henze G, Hoelzer D, Janka-Schaub GE, Macintyre EA, Pieters R, Rambaldi A, Ribera JM, Schmiegelow K, Spinelli O, Stary J, von Stackelberg A, Kneba M, Schrappe M, van Dongen JJ; European Working Group for Adult Acute Lymphoblastic Leukemia (EWALL); International Berlin-Frankfurt-Münster Study Group (I-BFM-SG). Standardized MRD quantification in European ALL trials: proceedings of the Second International Symposium on MRD assessment in Kiel, Germany, 18-20 September 2008. Leukemia. 2010 Mar;24(3):521-35.
- Calvelli, T., Denny, T.N., Paxton, H., Gelman, R., and Kagan, J.: Guidelines for flow cytometric immunophenotyping: A report from the National Institute of Allergy and Infectious Diseases, Division of AIDS. Cytometry 14:702-715, 1993.
- D’Hautcourt, J.-L.: Quantitative flow cytometric analysis of membrane antigen expression. Current Protocols in Cytometry 6.12.1-6.12.22, 2002.
- EuroFlow (Flow cytometry for fast and sensitive diagnosis and follow-up of haematological malignancies).
- Froebel, K.S. et al.: Standardization and quality assurance of lymphocyte proliferation assays for use in the assessment of immune function. J. Immunol. Methods 227: 85-97, 1999.
- Geisler, C.: Undersøgelse for overflademarkører med monoklonale antistoffer og flowcytometri. Kapitel 15.3 i: Celledyrkning - En praktisk håndbog i dyrkning af mammale celler; Kielberg, V., Brünner, N. & Briand, P. (red.), Foreningen af Danske Lægestuderendes Forlag, København, 1994; 2. uændrede udgave. Gad, København, 2001; side 243-248.
- Hulspas R, O'Gorman MRG, Wood BL, Gratama JW, Sutherland DR: Considerations for the control of background fluorescence in clinical flow cytometry. Cytometry Part B (Clinical Cytometry) 76B: 355-364, 2009.
- Johnsen Hans E, Knudsen L. for the nordic stem cell laboratoriy: Nordic Flow cytometry standards for CD34+ cell enumeration in blood and leukapheresis products; report from the second Nordic workshop. J of Hemototherapy 5: 237-245, 1996.
- Lenkei R, Mandy F, Marti G, Vogt R (Eds.): Quantitative Fluorescence Cytometry: An Emerging Consensus. Cytometry, Volume 33, Number 2, October 1, 1998.
- Lucio, P. et al.: BIOMED-1 concerted action report: Flow cytometric immunophenotyping of precursor B-ALL with standardized triple-stainings. Leukemia 15: 1185-1192, 2001.
- Lucio, P. et al.: Flow cytometric analysis of normal B cell differentiation: a frame of reference for the detection of minimal residual disease in precursor-B-ALL. Leukemia 13: 419-427, 1999.
- Malec, M. et al: Flow cytometry and allele specific oligonucleotide PCR are equally effective in detection of minimal residual disease in ALL. Leukemia 15: 716-727, 2001.
- Mandy, F.F.1, Nicholson, J.K.A.2, McDougal, J.S.3: Guidelines for Performing Single-Platform Absolute CD4+ T-Cell Determinations with CD45 Gating for Persons Infected with Human Immunodeficiency Virus. 1Bureau of HIV/AIDS, STD and TB, Population and Public Health Branch, Health Canada, Ottawa, Ontario, Canada, 2Office of the Director and 3Division of AIDS, STD, and TB Laboratory Research, National Center for Infectious Diseases, CDC.
- Nicholson, J., Kidd, P., Mandy, F., Livnat, D., Kagan, J: Three-Color Supplement to the NIAID DAIDS Guideline for Flow Cytometric Immunophenotyping. Cytometry (Communications in Clinical Cytometry) 26:227-230, 1996.
- Ornatsky O, Bandura D, Baranov V, Nitz M,
Winnik MA, Tanner S: Highly multiparametric analysis by mass cytometry. Journal of Immunological Methods 361:1-20, 2010.
- Ortolani C: Flow Cytometry of Hematological Malignancies. Wiley-Blackwell, 2011.
- Porwit-MacDonald, A. et al.: BIOMED-1 concerted action report: Flow cytometric characterization of CD7+ cell subsets in normal bone marrrow as a basis for the diagnosis for the diagnosis and follow-up of T cell acute lymphoblastic leukemia (T-ALL). Leukemia 14: 816-825, 2000.
- Stewart, C.C. & Nicholson, J.K.A. (eds.): Immunophenotyping. Wiley-Liss, New York, 2000 (ISBN 0-471-23957-7).
- Sutherland R, Anderson L, Keeney M, Nayar R and Chin-Yee I: The ISHAGE guideines for CD34+ cell determination by flow cytometry. J of Hematotherapy 1996: 5:213-226.
Intracellular staining
- Jensen UB, Owens DM, Pedersen S, Christensen R: Zinc fixation preserves flow cytometry scatter and fluorescence parameters and allows simultaneous analysis of DNA content and synthesis, and intracellular and surface epitopes. Cytometry (Part A) 77: 798-804, 2010.
- Brosterhus H, Brings S, Leyendeckers H, Manz RA, Miltenyi S, Radbruch A, Assenmacher M, Schmitz J. Enrichment and detection of live antigen-specific CD4(+) and CD8(+) T cells based on cytokine secretion. Eur J Immunol. 1999 Dec;29(12):4053-9.
- Jacobberger, J.W.: Flow cytometric analysis of intracellular protein epitopes. In: Stewart, C.C. & Nicholson, J.K.A. (eds.): Immunophenotyping. Wiley-Liss, New York, 2000 (ISBN 0-471-23957-7), pp 361-405.
- Larsen JK: Measurement of cytoplasmic and nuclear antigens. In: Flow cytometry. Third edition. A practical approach; Ormerod MG (ed). Oxford University Press, Oxford, 2000, pp 133-158.
- Manz R, Assenmacher M, Pfluger E, Miltenyi S, Radbruch A. Analysis and sorting of live cells according to secreted molecules, relocated to a cell-surface affinity matrix. Proc Natl Acad Sci U S A. 1995 Mar 14;92(6):1921-5.
- Pittet MJ, Zippelius A, Speiser DE, Assenmacher M, Guillaume P, Valmori D, Lienard D, Lejeune F, Cerottini JC, Romero P. Ex vivo IFN-gamma secretion by circulating CD8 T lymphocytes: implications of a novel approach for T cell monitoring in infectious and malignant diseases. J Immunol. 2001 Jun 15;166(12):7634-40.
Microbiology
- Alberghina, L. et al. (eds): Microbial Analysis at the Single Cell Level. J. Microbiol. Methods 42 (1), Sept 2000.
- Nebe-von-Caron, G., Stephens, P.J., Hewitt, C.J., Powell, J.R., Badley, R.A.: Analysis of bacterial function by multi-colour fluorescence flow cytometry and single cell sorting. J Microbiol Methods. 2000 Sep;42(1):97-114. Review.
Microfluidics & sorting
Microscale thermophoresis (MST)
Stem cells
Suspension array technologies
- Carson, R.T. & Vignali, D.A.: Simultaneous quantitation of 15 cytokines using a multiplexed flow cytometric assay. J. Immunol. Methods 227 (1-2): 41-52, 1999.
- Chen, J. et al.: A microsphere-based assay for multiplexed single nucleotide polymorphism analysis using single base chain extension. Genome Res 10 (4): 549-557, 2000.
- Early, M.C. et al.: Report from a workshop on multianalyte microsphere assays. Cytometry (Clinical Cytometry) 50: 239-242, 2002.
- Joos, T.O. et al.: Miniaturised multiplexed immunoassays. Curr. Opin. Chem. Biol. 6 (1): 76-80, 2002.
- Luminex/FlowMetrix/LabMap/xMAP Bibliography, 2002.
- Nolan, J.P. & Mandy, F.F.: Suspension array technology: new tools for gene and protein analysis. Cellular and Molecular Biology 47: 1241-1256, 2001.
- Yang, L. et al.: BADGE, Beads Array for the Detection of Gene Expression, a high-throughput diagnostic bioassay. Genome Res. 11 (11): 1888-1898, 2001
- Yang L, Nolan JP: High-throughput screening and characterization of clones selected from phage display libraries. Cytometry 71A: 625-631, 2007.
- Ye, F. et al.: Fluorescent microsphere-based readout technology for multiplexed human single nucleotide polymorphism analysis and bacterial identification. Hum. Mutat. 17 (4): 305-316, 2001.
Revised, 16 December 2011 /JKL